PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04054g01005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 227aa    MW: 25826.2 Da    PI: 8.011
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04054g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.53.2e-3348103359
               ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                               k +YkeClkNhA+s+GghavDGCgEfmp+ ge+g+ +alkCaAC+CHRnFHR+e++ 
  Niben101Scf04054g01005.1  48 KPKYKECLKNHAVSIGGHAVDGCGEFMPA-GEDGSLDALKCAACNCHRNFHRKETQI 103
                               679*************************9.999*********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2250102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.5E-3150100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-3050101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.89351100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.4E-28145219IPR009057Homeodomain-like
SuperFamilySSF466897.43E-18151218IPR009057Homeodomain-like
TIGRFAMsTIGR015653.7E-25157213IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEFETQEDQK EISTNYNSVL EISNSTNEPK MPSNSDELII DAPLQMRKPK YKECLKNHAV  60
SIGGHAVDGC GEFMPAGEDG SLDALKCAAC NCHRNFHRKE TQIHHLPYYR TPPCGYFQQV  120
MPQQRPLALP STSGGGGGGG YREDQEEMCN PNNSGTKKRF RTRFNQEQKE KMLELAEKLG  180
WRIQRQDEGV VQQLCNEIGI KRHVFKVWMH NNKLTLGKKT LIQSTNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-221562131673ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802158.11e-158PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
RefseqXP_016462880.11e-158PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
SwissprotA2Z2594e-67ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH54e-67ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLM1C6695e-89M1C669_SOLTU; Uncharacterized protein
TrEMBLM1D8C74e-89M1D8C7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000606231e-88(Solanum tuberosum)
STRINGPGSC0003DMT4000849191e-88(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-68homeobox protein 22